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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10361893_10363167_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10361893 - 10363167
Intron Length:
1275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGTTCCT
5'SS Class:
major
3'SS Sequence:
CATTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CCTTCAGGAACC
Flanking Amino Acid:
SSDAAHPDTLRIHESREYLD
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.8
0.3
1.3
60.3
44.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86.7
0.83
0.7
84.4
30
Minor 5ss
31.9
-2.1
3
43.4
43.5
Minor BPS
45.3
-0.3
2.3
60.1
44.8

Associated Gene:

Gene:
TERB2
Ensembl Gene ID:
ENSAPLG00000017869
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026738
10360021 - 10363987
3967