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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1036475_1036719_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1036475 - 1036719
Intron Length:
245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCC
5'SS Class:
strong_major
3'SS Sequence:
ACTCACTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
TTGTACTCACTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.2
36.8
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
77.6
0.62
0.9
73.4
36.1
Minor 5ss
30.3
-2.3
3.5
42
45
Minor BPS
49.6
0.05
2
73.04
44.1

Associated Gene:

Gene:
SLC24A5
Ensembl Gene ID:
ENSAPLG00000009353
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023002
1036135 - 1038658
2524