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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10369730_10369821_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10369730 - 10369821
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCGCCCCTCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAG
U12 Branch Point Sequence:
CGGCGCTCAGCG
Flanking Amino Acid:
VALLGQGQAKAAPKVQVYSR
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
47.4
-0.1
1.6
54.7
43.1
Major PPT
71.5
0.48
0.8
65.1
30.5
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
38.7
-1
2
37.76
44.5

Associated Gene:

Gene:
B2M
Ensembl Gene ID:
ENSAPLG00000002378
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002380
10368672 - 10369897
1226