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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1038569_1038890_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1038569 - 1038890
Intron Length:
322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTGTGATCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ACAAATTTAAAA
Flanking Amino Acid:
CAACGLLSNVVSRLSCWPLF
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
79.7
33.4
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
73.3
0.53
1
66.2
39.8
Minor 5ss
46.5
-0.4
2.5
59.7
39.2
Minor BPS
48.1
-0.1
1.6
53.83
37.9

Associated Gene:

Gene:
SLC24A5
Ensembl Gene ID:
ENSAPLG00000009353
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009734
1036833 - 1044817
7985