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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10388364_10388944_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10388364 - 10388944
Intron Length:
581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTGGG
5'SS Class:
major
3'SS Sequence:
TATTTCTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
TATTTCTCTACA
Flanking Amino Acid:
DVREFLEKEELPRAVGTQAL
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.3
67.1
44.6
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
86.7
0.83
0.7
81
30.7
Minor 5ss
27.5
-2.6
2.9
32.4
42.2
Minor BPS
57.7
0.24
1.9
72.46
39.4

Associated Gene:

Gene:
SNX1
Ensembl Gene ID:
ENSAPLG00000003989
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004143
10382476 - 10392896
10421