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Intron Name: Anas_platyrhynchos_platyrhynchos_11_10389276_10389776_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10389276 - 10389776

Intron Length:

501

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACGAGC

5'SS Class:

major

3'SS Sequence:

TTCCGTTCACTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTGTAT

U12 Branch Point Sequence:

ATTCCGTTCACT

Flanking Amino Acid:

VVETLVNHRKELALNTAQFA

Intron Amino Acid Position:

121

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.9

0.61

1.2

67.8

43.5

Major BPS

59.2

0.23

1.4

61.1

45.5

Major PPT

68.9

0.43

0.9

62.9

38.4

Minor 5ss

38.2

-1.3

3.2

52.1

44.7

Minor BPS

52.3

0.15

2.4

79.83

Associated Gene:

Gene:

SNX1

Ensembl Gene ID:

ENSAPLG00000003989

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004143

10382476 - 10392896

10421