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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1038992_1039773_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1038992 - 1039773
Intron Length:
782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCACTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACT
Flanking Amino Acid:
LAMISDSRIYWYESASLLLI
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
70.5
33.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
82.6
0.73
0.7
75.5
34.3
Minor 5ss
30.9
-2.2
3.3
36.6
41.5
Minor BPS
72.2
0.78
1.7
90.89
33.1

Associated Gene:

Gene:
SLC24A5
Ensembl Gene ID:
ENSAPLG00000009353
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009734
1036833 - 1044817
7985