About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10389983_10391087_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10389983 - 10391087
Intron Length:
1105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTCAG
U12 Branch Point Sequence:
GCCAGCTCAGCC
Flanking Amino Acid:
DYIRLLSVVRGAFDQRMKTW
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
75.3
40.8
Major BPS
48.8
-0
1.5
57.1
41.8
Major PPT
86.6
0.82
0.7
84.4
23.5
Minor 5ss
41.6
-0.9
2.9
51
45.2
Minor BPS
40
-0.7
2
43.91
43.6

Associated Gene:

Gene:
SNX1
Ensembl Gene ID:
ENSAPLG00000003989
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004143
10382476 - 10392896
10421