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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10391232_10391572_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10391232 - 10391572
Intron Length:
341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCGT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
TTACCCTGGAAA
Flanking Amino Acid:
LQQAKDEISEWESRVTQYER
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
69.5
42.7
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
82.1
0.72
0.7
76.4
25.6
Minor 5ss
27
-2.6
3.3
38.6
46.5
Minor BPS
54.3
0.13
1.6
67.22
38.2

Associated Gene:

Gene:
SNX1
Ensembl Gene ID:
ENSAPLG00000003989
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004143
10382476 - 10392896
10421