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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10391654_10392065_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10391654 - 10392065
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTAG
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ACTTCTGCAACT
Flanking Amino Acid:
VIRKEVIRFEKEKSKDFRKH
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1
74.9
38.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
82.4
0.73
0.8
76.8
31.8
Minor 5ss
38.1
-1.3
3.1
48.2
47.9
Minor BPS
50.7
0.1
2.2
74.15
43

Associated Gene:

Gene:
SNX1
Ensembl Gene ID:
ENSAPLG00000003989
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004143
10382476 - 10392896
10421