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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10392138_10392480_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10392138 - 10392480
Intron Length:
343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
TGGCTCCTGACT
Flanking Amino Acid:
LETLLNSQQQLVKYWEAFLP
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.7
84.8
25.1
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
86
0.81
0.7
80.8
24.4
Minor 5ss
31.8
-2.1
3.3
42.9
44.7
Minor BPS
51.6
0.13
1.7
69.95
40.8

Associated Gene:

Gene:
SNX1
Ensembl Gene ID:
ENSAPLG00000003989
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004143
10382476 - 10392896
10421