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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10393823_10393945_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10393823 - 10393945
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGACC
5'SS Class:
major
3'SS Sequence:
TGCTCTGCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTCCAT
U12 Branch Point Sequence:
CCGTGTCCATGC
Flanking Amino Acid:
YSEFQALHKRIKKTCKVPDF
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
66.5
39.1
Major BPS
62.1
0.3
1.4
72.5
43.5
Major PPT
70
0.45
0.9
61.3
40.1
Minor 5ss
27.6
-2.6
2.9
27.2
36.2
Minor BPS
28.9
-1.6
2
29.8
36.6

Associated Gene:

Gene:
SNX1
Ensembl Gene ID:
ENSAPLG00000003989
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048479
10391952 - 10394592
2641