About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1040055_1040774_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1040055 - 1040774
Intron Length:
720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAAGTA
5'SS Class:
major
3'SS Sequence:
ACTTCCTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
ACTTCCTCAACA
Flanking Amino Acid:
SLHGLDEISEDHPSVFTMPE
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
68.5
36.7
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
71.9
0.49
0.9
66.5
33.7
Minor 5ss
32
-2.1
3.8
46.4
48.9
Minor BPS
73.2
0.72
1.5
78.28
38.2

Associated Gene:

Gene:
SLC24A5
Ensembl Gene ID:
ENSAPLG00000009353
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009734
1036833 - 1044817
7985