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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10408239_10410562_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10408239 - 10410562
Intron Length:
2324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTTCT
5'SS Class:
major
3'SS Sequence:
GTTTGTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
GGGGCTTTAACG
Flanking Amino Acid:
AADRHGGSVQVVSSTNGELN
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.2
72.5
39.7
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
83.5
0.75
0.9
77.3
37
Minor 5ss
47.3
-0.3
2.8
68.6
42
Minor BPS
58.7
0.13
1.6
56.49
45

Associated Gene:

Gene:
CSNK1G1
Ensembl Gene ID:
ENSAPLG00000004446
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004628
10401907 - 10487311
85405