About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1040982_1043852_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1040982 - 1043852
Intron Length:
2871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTACCAACTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TATTTACCAACT
Flanking Amino Acid:
YVLVWMITIAGETLGIPESV
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
78.8
35.5
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
70.9
0.47
0.9
63.2
37
Minor 5ss
35.6
-1.6
2.9
46
42.3
Minor BPS
48.6
-0
2.1
75.61
40.3

Associated Gene:

Gene:
SLC24A5
Ensembl Gene ID:
ENSAPLG00000009353
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009734
1036833 - 1044817
7985