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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10410671_10414354_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10410671 - 10414354
Intron Length:
3684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTTAC
5'SS Class:
strong_major
3'SS Sequence:
GACTTGTGAGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTGGAC
U12 Branch Point Sequence:
TGCTTCTGGACT
Flanking Amino Acid:
RPSQQALRNQASSDRRGEWE
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
76.2
28.4
Major BPS
49.6
-0
1.4
51
44.3
Major PPT
59.5
0.21
1.1
54.5
44.4
Minor 5ss
41.1
-1
2.7
51.5
45.7
Minor BPS
62.2
0.46
1.5
76.2
40.4

Associated Gene:

Gene:
CSNK1G1
Ensembl Gene ID:
ENSAPLG00000004446
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004628
10401907 - 10487311
85405