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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10414460_10416025_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10414460 - 10416025
Intron Length:
1566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTCAG
5'SS Class:
major
3'SS Sequence:
CTTTATTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTCAT
U12 Branch Point Sequence:
TTCATCCTAACA
Flanking Amino Acid:
YAYDWVGRPIPTPVGSVHVD
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
63.6
42.3
Major BPS
77
0.67
1.1
77.7
37.1
Major PPT
88.3
0.86
0.7
80.5
36.7
Minor 5ss
36.1
-1.6
3
47.2
42.5
Minor BPS
60.4
0.32
1.7
72.43
39.4

Associated Gene:

Gene:
CSNK1G1
Ensembl Gene ID:
ENSAPLG00000004446
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004628
10401907 - 10487311
85405