Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10416175_10417369_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10416175 - 10417369

Intron Length:

1195

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAGCCC

5'SS Class:

major

3'SS Sequence:

CCTTTTTTAACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTAAC

U12 Branch Point Sequence:

CCTTTTTTAACA

Flanking Amino Acid:

PVEVLCENFPEEMATYLRYV

Intron Amino Acid Position:

283

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.1

0.66

63.8

40.7

Major BPS

0.45

0.9

67.6

25.3

Major PPT

83.2

0.75

0.8

80.1

30.5

Minor 5ss

31.4

-2.1

3.3

42.6

44.4

Minor BPS

73.1

0.72

1.2

73.92

38.7

Associated Gene:

Gene:

CSNK1G1

Ensembl Gene ID:

ENSAPLG00000004446

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004628

10401907 - 10487311

85405