About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10421985_10428687_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10421985 - 10428687
Intron Length:
6703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CATCCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTCAT
U12 Branch Point Sequence:
TTTGCCTCATCC
Flanking Amino Acid:
KTVLMIAIQLISRMEYVHSK
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74
36.6
Major BPS
64.6
0.36
1.3
67.6
40.6
Major PPT
82.2
0.72
0.8
76.4
31.8
Minor 5ss
30.8
-2.2
2.6
33.6
35.6
Minor BPS
58.4
0.24
1.9
74.6
42.2

Associated Gene:

Gene:
CSNK1G1
Ensembl Gene ID:
ENSAPLG00000004446
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004628
10401907 - 10487311
85405