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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10449134_10453886_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10449134 - 10453886
Intron Length:
4753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTCAAAGATT
Flanking Amino Acid:
YTNEYVAIKLEPIKSRAPQL
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.5
41.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
91.4
0.93
0.6
85.5
29.2
Minor 5ss
35.3
-1.7
2.7
39.4
40.3
Minor BPS
47.8
-0
2.2
77.26
39.3

Associated Gene:

Gene:
CSNK1G1
Ensembl Gene ID:
ENSAPLG00000004446
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004628
10401907 - 10487311
85405