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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10459331_10482153_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
10459331 - 10482153
Intron Length:
22823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
76.7
31.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.9
0.76
0.8
77.4
36.7
Minor 5ss
31.7
-2.1
2.6
35.1
34.5
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
CSNK1G1
Ensembl Gene ID:
ENSAPLG00000004446
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004628
10401907 - 10487311
85405