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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10504828_10507616_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10504828 - 10507616
Intron Length:
2789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCATTTTATTT
Flanking Amino Acid:
EVKTPIDLAKAQENNAGVSS
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.1
34.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.5
0.89
0.6
88.5
20.9
Minor 5ss
26.1
-2.7
3.2
32
42.6
Minor BPS
54.9
0.23
1.6
71.35
40.7

Associated Gene:

Gene:
TRIP4
Ensembl Gene ID:
ENSAPLG00000004612
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004789
10503669 - 10531553
27885
ENSAPLT00000019303
10503669 - 10535894
32226