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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10510743_10511057_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10510743 - 10511057
Intron Length:
315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
CTGTGCTGATCT
Flanking Amino Acid:
KDKLLEFDRTSVRRTQVIDD
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.1
30.7
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
79
0.65
1
73.4
41.9
Minor 5ss
37
-1.5
3.3
49.2
47.3
Minor BPS
47.6
-0.1
2.2
68.36
48.2

Associated Gene:

Gene:
TRIP4
Ensembl Gene ID:
ENSAPLG00000004612
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019303
10503669 - 10535894
32226
ENSAPLT00000004789
10503669 - 10531553
27885