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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10511978_10512707_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10511978 - 10512707
Intron Length:
730

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTCAGTATG
5'SS Class:
major
3'SS Sequence:
TTGAACACTGAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
NPRLLQPAPLWVDQTGLLPH
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.3
74.5
41.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
56.4
0.14
1.1
54.6
40.1
Minor 5ss
34.9
-1.7
2.7
40.3
39.5
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
TRIP4
Ensembl Gene ID:
ENSAPLG00000004612
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019303
10503669 - 10535894
32226
ENSAPLT00000004789
10503669 - 10531553
27885