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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10515378_10531024_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10515378 - 10531024
Intron Length:
15647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
GTCTCTGTGTTT
Flanking Amino Acid:
CLSQEQFNEQYPDLSQESGS
Intron Amino Acid Position:
528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.8
22.5
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
81.9
0.72
0.9
76.3
37.7
Minor 5ss
36
-1.6
2.6
43.5
43.6
Minor BPS
36.2
-1
3.6
62.54
42.7

Associated Gene:

Gene:
TRIP4
Ensembl Gene ID:
ENSAPLG00000004612
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004789
10503669 - 10531553
27885
ENSAPLT00000019303
10503669 - 10535894
32226