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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1053071_1053148_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1053071 - 1053148
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTATGTGCA
5'SS Class:
major
3'SS Sequence:
CCTTATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TCTTCCTTATTT
Flanking Amino Acid:
GFGGMNRMGGGLPGFRGMEG
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
68.1
37
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.2
0.79
0.8
79.2
32.5
Minor 5ss
39.5
-1.2
3.1
50.4
46
Minor BPS
75.3
0.87
1.5
87.57
38.6

Associated Gene:

Gene:
MYEF2
Ensembl Gene ID:
ENSAPLG00000008935
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009351
1045477 - 1062922
17446
ENSAPLT00000046975
1045531 - 1062922
17392
ENSAPLT00000031901
1045531 - 1062922
17392