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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10531128_10531309_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10531128 - 10531309
Intron Length:
182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
CCCCTTTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
ACATCTGTAATA
Flanking Amino Acid:
KFPIKGKPKIYVVSF*
Intron Amino Acid Position:
562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
75.1
40.8
Major BPS
66.1
0.4
1
73
31.5
Major PPT
75.6
0.58
0.7
67.8
32.2
Minor 5ss
40.4
-1.1
2.9
61.4
42.9
Minor BPS
51.6
0.05
2
61.85
39.1

Associated Gene:

Gene:
TRIP4
Ensembl Gene ID:
ENSAPLG00000004612
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004789
10503669 - 10531553
27885