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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1053495_1053640_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1053495 - 1053640
Intron Length:
146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTGAGTACG
5'SS Class:
major
3'SS Sequence:
TCCTTTTTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
CTTATGATAATA
Flanking Amino Acid:
VADSKGPQLPRGLGGIGMGL
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.39
1.3
64.1
41.7
Major BPS
84.6
0.86
1
74
41.2
Major PPT
74.3
0.55
1
74.1
34.4
Minor 5ss
32.1
-2
2.6
35.5
34.4
Minor BPS
45
-0.3
2.2
60.09
40.4

Associated Gene:

Gene:
MYEF2
Ensembl Gene ID:
ENSAPLG00000008935
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038101
1045477 - 1062922
17446
ENSAPLT00000031901
1045531 - 1062922
17392
ENSAPLT00000009351
1045477 - 1062922
17446
ENSAPLT00000046975
1045531 - 1062922
17392