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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1053705_1053790_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1053705 - 1053790
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAA
U12 Branch Point Sequence:
TGTTTCTTATCA
Flanking Amino Acid:
LFDRPMHVKMDDKSVPHEDF
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
74.9
36.2
Major BPS
67.1
0.42
1
59
37.9
Major PPT
82.5
0.73
0.9
82.2
34.2
Minor 5ss
40.7
-1
2.8
49.7
41.9
Minor BPS
71.3
0.67
1.5
79.75
36.3

Associated Gene:

Gene:
MYEF2
Ensembl Gene ID:
ENSAPLG00000008935
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038101
1045477 - 1062922
17446
ENSAPLT00000031901
1045531 - 1062922
17392
ENSAPLT00000009351
1045477 - 1062922
17446
ENSAPLT00000046975
1045531 - 1062922
17392