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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1054434_1055085_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1054434 - 1055085
Intron Length:
652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGTGTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACATAT
U12 Branch Point Sequence:
AATCACTTACAT
Flanking Amino Acid:
RLGSTIFVANLDFKVGWKKL
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
89.9
23.2
Major BPS
66.4
0.41
1
61.3
37
Major PPT
64.5
0.33
1.2
71
38.8
Minor 5ss
48.6
-0.1
2.8
71.8
38.1
Minor BPS
48.7
-0
1.9
68.02
41.7

Associated Gene:

Gene:
MYEF2
Ensembl Gene ID:
ENSAPLG00000008935
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038101
1045477 - 1062922
17446
ENSAPLT00000031901
1045531 - 1062922
17392
ENSAPLT00000009351
1045477 - 1062922
17446
ENSAPLT00000046975
1045531 - 1062922
17392