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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10548156_10574701_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10548156 - 10574701
Intron Length:
26546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTGAC
U12 Branch Point Sequence:
TTCTCTTTCCCT
Flanking Amino Acid:
RQLKKVKSEKMESPVSTPAV
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
78.6
37.2
Major BPS
56.2
0.15
1.3
48.8
46.3
Major PPT
86.8
0.83
0.7
81.5
23.5
Minor 5ss
31.6
-2.1
3.1
38.7
46.6
Minor BPS
44.9
-0.3
3.6
78.9
44

Associated Gene:

Gene:
ZNF609
Ensembl Gene ID:
ENSAPLG00000029091
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019159
10547409 - 10589691
42283