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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1055278_1056129_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1055278 - 1056129
Intron Length:
852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGATTA
5'SS Class:
strong_major
3'SS Sequence:
GCACATGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTGGCTTTATTT
Flanking Amino Acid:
LNGRPLNIKEDPEGEHARRA
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
79.5
29.5
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
65.3
0.35
1
57.2
42.7
Minor 5ss
47.6
-0.2
2.8
64.6
46.8
Minor BPS
58.9
0.36
1.7
74.92
43

Associated Gene:

Gene:
MYEF2
Ensembl Gene ID:
ENSAPLG00000008935
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046975
1045531 - 1062922
17392
ENSAPLT00000038101
1045477 - 1062922
17446
ENSAPLT00000031901
1045531 - 1062922
17392
ENSAPLT00000009351
1045477 - 1062922
17446