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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1057649_1058860_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1057649 - 1058860
Intron Length:
1212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTAT
5'SS Class:
strong_major
3'SS Sequence:
ATGTCTTATGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TATGTCTTATGT
Flanking Amino Acid:
QAIKDLMREKVGEVTYVELF
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
85.9
25.1
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
71.4
0.48
0.9
67
38.9
Minor 5ss
41.9
-0.9
2.9
58.4
46.2
Minor BPS
50.9
0.11
2
72.18
44.9

Associated Gene:

Gene:
MYEF2
Ensembl Gene ID:
ENSAPLG00000008935
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046975
1045531 - 1062922
17392
ENSAPLT00000038101
1045477 - 1062922
17446
ENSAPLT00000031901
1045531 - 1062922
17392
ENSAPLT00000009351
1045477 - 1062922
17446