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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10594219_10599356_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10594219 - 10599356
Intron Length:
5138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCTGTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
ATTTCACGAGCT
Flanking Amino Acid:
DPSLSALIYKDEKITVNQDV
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.8
76.8
33.7
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
72.7
0.51
0.9
64.5
36.5
Minor 5ss
27.4
-2.6
2.7
30.4
43
Minor BPS
46.2
-0.2
2.2
74.1
41.8

Associated Gene:

Gene:
OAZ2
Ensembl Gene ID:
ENSAPLG00000004764
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018427
10589843 - 10600989
11147