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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10599515_10600779_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
10599515 - 10600779
Intron Length:
1265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTACGAGGT
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACGTAAC
U12 Branch Point Sequence:
TTGTCCCTTTTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
61.3
43.6
Major BPS
53.1
0.08
1.2
55.3
37.9
Major PPT
90
0.9
0.7
84.9
29.9
Minor 5ss
31.6
-2.1
3.7
47.4
48.1
Minor BPS
39.5
-0.7
3.7
72.45
44.6

Associated Gene:

Gene:
OAZ2
Ensembl Gene ID:
ENSAPLG00000004764
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018427
10589843 - 10600989
11147