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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10666868_10668994_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10666868 - 10668994
Intron Length:
2127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATAAGT
5'SS Class:
major
3'SS Sequence:
TTCATCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCTCCTTTCATC
Flanking Amino Acid:
VGSGVTHLKPGDRVAIEPGV
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
73.5
37.1
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
73.2
0.52
1
69.5
36.7
Minor 5ss
29.8
-2.3
2.9
40.9
44.9
Minor BPS
56.9
0.2
1.7
67.01
39.4

Associated Gene:

Gene:
SORD
Ensembl Gene ID:
ENSAPLG00000004875
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005050
10666368 - 10682091
15724