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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10669155_10671484_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10669155 - 10671484
Intron Length:
2330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTCAGTCGC
5'SS Class:
major
3'SS Sequence:
CTGGCTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTCAT
U12 Branch Point Sequence:
TGTTTTGTGTCT
Flanking Amino Acid:
YYKHSASYCYKLPDNVTFEE
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.3
60.8
44.4
Major BPS
73.5
0.58
1
73.6
32.5
Major PPT
75.9
0.58
0.9
69.1
37
Minor 5ss
31.7
-2.1
2.8
36.9
33.5
Minor BPS
38.3
-0.8
3.7
70.47
41.3

Associated Gene:

Gene:
SORD
Ensembl Gene ID:
ENSAPLG00000004875
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005050
10666368 - 10682091
15724