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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10672123_10677592_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10672123 - 10677592
Intron Length:
5470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
AGTTCGTGACAT
Flanking Amino Acid:
MMGAATVVVTDLSASRLQKA
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
90.9
0.92
0.7
88.9
28.1
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
43.6
-0.4
2.4
65.56
44.3

Associated Gene:

Gene:
SORD
Ensembl Gene ID:
ENSAPLG00000004875
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005050
10666368 - 10682091
15724