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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10684075_10684416_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10684075 - 10684416
Intron Length:
342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTGCC
5'SS Class:
major
3'SS Sequence:
CCTCCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
GCAGGCTGACCC
Flanking Amino Acid:
FDSLQEVHPEVHKIGVFSCG
Intron Amino Acid Position:
1495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.2
67
36.7
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
73.8
0.54
0.7
65
30.6
Minor 5ss
36.4
-1.5
2.9
45.4
42.7
Minor BPS
40
-0.7
2.1
44.36
43.4

Associated Gene:

Gene:
DUOX2
Ensembl Gene ID:
ENSAPLG00000005182
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005395
10683952 - 10702131
18180