About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10684546_10684626_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10684546 - 10684626
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCCCT
5'SS Class:
major
3'SS Sequence:
ATCTCTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
GTGTGCTGATCT
Flanking Amino Acid:
EKFDLRTTMLYICERHFQKV
Intron Amino Acid Position:
1452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
64.1
41.7
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
82.2
0.72
0.8
73.5
36.4
Minor 5ss
35.2
-1.7
3.1
45.9
43.3
Minor BPS
48
-0
2.1
69.59
46.8

Associated Gene:

Gene:
DUOX2
Ensembl Gene ID:
ENSAPLG00000005182
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005395
10683952 - 10702131
18180