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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10685071_10685221_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10685071 - 10685221
Intron Length:
151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCGT
5'SS Class:
strong_major
3'SS Sequence:
GGCTCCTTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TCTCTGCTGATG
Flanking Amino Acid:
SLAVLGKLPKLYLDGPFGEG
Intron Amino Acid Position:
1347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
69.5
42.7
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
70.9
0.47
0.9
61.8
39.9
Minor 5ss
27
-2.6
3.3
38.6
46.5
Minor BPS
40.6
-0.8
2.2
47.66
40.2

Associated Gene:

Gene:
DUOX2
Ensembl Gene ID:
ENSAPLG00000005182
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005395
10683952 - 10702131
18180