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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10686267_10686384_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10686267 - 10686384
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTGAA
5'SS Class:
major
3'SS Sequence:
GTCCCTCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGCAAT
U12 Branch Point Sequence:
CCTGGTGCAATT
Flanking Amino Acid:
CLFSSVFMNDGSQLPQKYYW
Intron Amino Acid Position:
1158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
68.5
38.7
Major BPS
47.6
-0.1
1.5
56.5
46.9
Major PPT
71.1
0.47
0.8
62.3
34.7
Minor 5ss
30.2
-2.3
3.3
30.7
43.3
Minor BPS
36.6
-0.9
2.3
50.4
44.9

Associated Gene:

Gene:
DUOX2
Ensembl Gene ID:
ENSAPLG00000005182
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005395
10683952 - 10702131
18180