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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10687581_10688396_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10687581 - 10688396
Intron Length:
816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCAAAAT
U12 Branch Point Sequence:
TGAACCTCAAAA
Flanking Amino Acid:
GQELRKRTGRKANQYQLHLY
Intron Amino Acid Position:
988

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.7
33.7
Major BPS
58
0.2
1.2
63.9
38.5
Major PPT
77.7
0.62
1
72.6
42.4
Minor 5ss
35.6
-1.6
2.8
42.7
38.3
Minor BPS
54.1
0.12
1.7
64.31
40.9

Associated Gene:

Gene:
DUOX2
Ensembl Gene ID:
ENSAPLG00000005182
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005395
10683952 - 10702131
18180