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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10688493_10688970_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10688493 - 10688970
Intron Length:
478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTTAG
U12 Branch Point Sequence:
TGAGACATACCC
Flanking Amino Acid:
RVSFIKKEPRGTVSDGERDP
Intron Amino Acid Position:
956

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
78.8
35.5
Major BPS
49.4
-0
1.6
49.2
46
Major PPT
78.8
0.65
0.9
76.3
32.3
Minor 5ss
34.9
-1.7
3.2
42.4
44.3
Minor BPS
43
-0.5
2
54.13
43

Associated Gene:

Gene:
DUOX2
Ensembl Gene ID:
ENSAPLG00000005182
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005395
10683952 - 10702131
18180