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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10689501_10689738_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10689501 - 10689738
Intron Length:
238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTCTC
5'SS Class:
major
3'SS Sequence:
CTCCTTGCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
GTCCTCTGAAGT
Flanking Amino Acid:
LSKEEFLRMLRSFIEISNNC
Intron Amino Acid Position:
875

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
69.2
41.7
Major BPS
69.8
0.49
1
61
37.5
Major PPT
77
0.61
0.9
68.5
37.3
Minor 5ss
37.8
-1.4
3.2
53.5
43.6
Minor BPS
49.5
0.04
1.8
66.64
43.8

Associated Gene:

Gene:
DUOX2
Ensembl Gene ID:
ENSAPLG00000005182
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005395
10683952 - 10702131
18180