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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10691358_10691698_R

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10691358 - 10691698
Intron Length:
341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
GGGCTTCGGGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
CTGCCACTCACA
Flanking Amino Acid:
LLKSPKEYDLVLLFNEEAER
Intron Amino Acid Position:
707

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
76.7
31.8
Major BPS
64.9
0.37
1
67
29.8
Major PPT
54.8
0.11
1.2
50.1
43.9
Minor 5ss
31.7
-2.1
2.6
35.1
34.5
Minor BPS
42.2
-0.6
2.2
54.65
43.7

Associated Gene:

Gene:
DUOX2
Ensembl Gene ID:
ENSAPLG00000005182
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005395
10683952 - 10702131
18180