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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10691902_10692580_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10691902 - 10692580
Intron Length:
679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGTGG
5'SS Class:
major
3'SS Sequence:
TCTGTCCCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CCTTTCTGACTG
Flanking Amino Acid:
RREVASEAIHAMEWHGPKTD
Intron Amino Acid Position:
639

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
57.8
43.7
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
76.7
0.6
0.8
73.7
31.4
Minor 5ss
31.2
-2.2
3.2
38.2
46.7
Minor BPS
47.3
-0.3
1.8
50.82
44.3

Associated Gene:

Gene:
DUOX2
Ensembl Gene ID:
ENSAPLG00000005182
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005395
10683952 - 10702131
18180