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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10692692_10692846_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10692692 - 10692846
Intron Length:
155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTTGCCTC
5'SS Class:
major
3'SS Sequence:
CGTGTGTCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATCTCATGCATC
Flanking Amino Acid:
IIVILFCLPLVSLFAAWIVA
Intron Amino Acid Position:
602

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.2
60.9
43.8
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
67.5
0.39
1
57.5
43.2
Minor 5ss
44.9
-0.5
2.8
59.9
44.8
Minor BPS
45.2
-0.3
2.1
58.69
40.4

Associated Gene:

Gene:
DUOX2
Ensembl Gene ID:
ENSAPLG00000005182
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005395
10683952 - 10702131
18180