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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10694539_10694956_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10694539 - 10694956
Intron Length:
418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACAGGA
5'SS Class:
major
3'SS Sequence:
GGTTTCTGGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
CCTCTGTTCACA
Flanking Amino Acid:
MDLAPHLEQEVLKNVADLYA
Intron Amino Acid Position:
461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.2
66.1
40.1
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
64.4
0.32
1.2
58
47.3
Minor 5ss
35.3
-1.7
3.4
47.8
47.6
Minor BPS
43.9
-0.4
2.4
55.35
44.1

Associated Gene:

Gene:
DUOX2
Ensembl Gene ID:
ENSAPLG00000005182
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005395
10683952 - 10702131
18180