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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10695121_10695457_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10695121 - 10695457
Intron Length:
337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTGCT
5'SS Class:
major
3'SS Sequence:
GTTCAACCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTACCAT
U12 Branch Point Sequence:
TCTTCCTTACCA
Flanking Amino Acid:
EDNILVEDLQDYWYGPLKYS
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.3
71.5
38.6
Major BPS
65.6
0.39
1.3
75.1
39.4
Major PPT
71.6
0.49
0.9
63.3
38.1
Minor 5ss
36.8
-1.5
3.1
50.8
45.6
Minor BPS
76.3
0.82
1.6
83.03
38.2

Associated Gene:

Gene:
DUOX2
Ensembl Gene ID:
ENSAPLG00000005182
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005395
10683952 - 10702131
18180